heatitup-complete: Find and annotate ITDs with assembly or read pair joining.
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
Downloads
- heatitup-complete-0.5.3.3.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
Candidates
- No Candidates
| Versions [RSS] | 0.5.3.3, 0.5.4.0, 0.5.4.1, 0.5.5.0 |
|---|---|
| Dependencies | base (>=4.7 && <5), bytestring, cassava, containers, fasta, foldl, heatitup-complete, lens, optparse-applicative, pipes, pipes-text, safe, text, text-show, turtle, vector [details] |
| License | GPL-3.0-only |
| Copyright | Copyright: (c) 2018 Gregory W. Schwartz |
| Author | Gregory W. Schwartz |
| Maintainer | gsch@pennmedicine.upenn.edu |
| Uploaded | by GregorySchwartz at 2018-08-28T19:21:39Z |
| Category | Bioinformatics |
| Home page | http://github.com/GregorySchwartz/heatitup-complete#readme |
| Source repo | head: git clone https://github.com/GregorySchwartz/heatitup-complete |
| Distributions | |
| Executables | heatitup-complete |
| Downloads | 1751 total (4 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs available [build log] Last success reported on 2018-08-28 [all 1 reports] |